• Skip to primary navigation
  • Skip to main content
  • Skip to primary sidebar
  • Skip to footer
Lowbrow Fancy logo
  • All Recipes
  • Cookies
  • Bread
  • Cake
  • Pie & Pastry
  • Desserts
  • About
Home • Quick Breads • Sourdough Blueberry Lemon Muffins (Better than Bakery!)

Sourdough Blueberry Lemon Muffins (Better than Bakery!)

Author: Joanna Rankin·Published: May 8th, 2025

Jump to Recipe Print Recipe

These sourdough blueberry lemon muffins are everything a bakery muffin wishes it could be: tall, tender, bursting with juicy berries, and topped with a buttery, spiced crumble that delivers serious coffee shop vibes—without the price tag.

Some links in this post may be affiliate links. Read my disclosure policy.

Baking pan with baked sourdough blueberry lemon muffins. One muffin is missing, and is on a wire cooling rack.

Jump To:

  • You’re Going to Love These Muffins!
  • Ingredients You’ll Need (And Why)
    • Pro Tip
  • How to Make Sourdough Blueberry Lemon Muffins
    • Step 1: Make the Crumble Topping
    • Step 2: Prep the Muffin Batter
    • Pro Tip
    • Step 3: Assemble and Bake
    • Pro Tip
  • Tips for Bakery-Style Sourdough Blueberry Lemon Muffins
    • Pro Tip
  • Flavour Variations
  • Make-Ahead and Storage
  • How to Serve Sourdough Blueberry Lemon Muffins
  • FAQs
  • Tried These Muffins?
  • Bakery-Style Sourdough Blueberry Lemon Muffins
    • Ingredients  
    • Method 

You’re Going to Love These Muffins!

  • Bakery-style domed tops: Impressively tall and golden, no fancy equipment required!
  • Bright, juicy flavour from fresh or frozen blueberries paired with lemon zest and juice for a classic flavour combo.
  • Sourdough discard adds a subtle tang and keeps the muffins moist for days.
  • Buttery crumble topping adds lots of crunch with a hint of nutmeg, for the perfect texture contrast.
  • Super flexible: make these the same day, or ferment the dough in the fridge overnight for an even better flavour and texture.
  • Better than bakery muffins! No dry, overly sweet disappointments here—just real ingredients and flavour that shines.

If you like the idea of blueberry lemon muffins, you’ll also love my blueberry lemon scones made with sourdough discard! Or if you love muffins, you should try making my Sourdough Double Chocolate Banana Muffins recipe.

Plate of sourdough blueberry lemon muffins. One muffin is in the foreground with an open paper wrapping, and a couple of loose blueberries next to it.

Ingredients You’ll Need (And Why)

What makes these muffins really shine:

  • Sourdough discard or active starter adds tangy flavour complexity and keeps the crumb tender and moist. You can leave the muffins uncovered at room temperature, and they’ll still be soft three days later! No starter yet? Learn how to make a sourdough starter from scratch (it’s easier than you think, I promise!). Alternatively, ask in a local Facebook group, check with a nearby bakery, or purchase dehydrated starter online.
  • Lemon zest & juice: Zest rubbed into sugar releases essential oils for maximum flavor; juice adds brightness and reacts with baking soda for lift.
  • Sour cream Contributes richness and a tender crumb.
  • Blueberries: Fresh or frozen, they add juicy bursts of fruity flavour.
  • Crumble topping with melted butter, flour, sugar, and a pinch of nutmeg creates a crunchy, spiced topping.

Pro Tip

If using frozen blueberries, mix them into the batter straight from the freezer and bake immediately to minimize bleeding.

How to Make Sourdough Blueberry Lemon Muffins

Step 1: Make the Crumble Topping

  • Whisk together flour, sugar, and nutmeg.
  • Add melted butter and stir until large crumbs form.
  • Refrigerate or freeze while preparing the batter.

Step 2: Prep the Muffin Batter

  • Rub lemon zest into sugar until fragrant.
  • Whisk in sourdough discard, sour cream, lemon juice, eggs, and vanilla.
  • In a separate bowl, whisk together flour, baking powder, baking soda, and salt.
  • Combine wet and dry ingredients until just mixed.
  • Gently fold in blueberries.

Pro Tip

Use a blue (2 oz) cookie scoop or ¼-cup measuring cup to make sure each muffin gets the same amount of batter.

A hand sprinkling crumble topping onto muffin batter portioned into muffin cups, in a muffin baking pan.

Step 3: Assemble and Bake

  • Divide batter evenly into muffin cups.
  • Top each with a generous amount of crumble topping.
  • Bake at 425°F (220°C) for 5 minutes, then reduce to 350°F (175°C) and continue baking until a toothpick comes out clean.
  • Use a blue cookie scoop or ¼-cup measuring cup to portion the batter into muffin cups
  • Top each with a generous sprinkling of crumble topping
  • Bake at 425°F for 5 minutes, then reduce to 350°F until done

Pro Tip

Starting at a high heat gives the muffins a quick boost to create a beautiful bakery-style domed top.

Baked sourdough blueberry lemon muffins on a wire rack, with a sliced lemon and loose blueberries in the foreground and background.

Tips for Bakery-Style Sourdough Blueberry Lemon Muffins

  • Rest the batter: Let it sit for 15–30 minutes before baking for taller muffins. Skip this tip if using frozen blueberries, which need to be baked immediately after being added to the batter.
  • Don’t overmix: A few lumps are okay; overmixing can lead to dense muffins.
  • Use an oven thermometer: Ensure accurate temperature for even baking.
  • Rotate the pan: Turn halfway through baking to promote even rise and browning.

Pro Tip

Leave the batter in the fridge overnight. Some fermentation will take place, which will make the flavour and texture even better!

Muffin pan with baked sourdough blueberry lemon muffins. One muffin has an unwrapped paper wrapper and a bite taken out of it.

Flavour Variations

  • Berry swap: Use raspberries or blackberries instead of blueberries.
  • Add poppy seeds: Stir in a tablespoon for a lemon-poppy-blueberry twist.
  • Cranberry Orange: Replace blueberries and lemon with fresh cranberries and orange zest and juice for a wintery version.
Sourdough blueberry lemon muffins stacked on a blue plate.

Make-Ahead and Storage

  • Room temperature: Store uncovered or in an airtight container for up to 3 days.
  • Freeze baked muffins: Cool completely, then freeze in an airtight container for up to 3 months.
  • Freeze unbaked batter: Portion into muffin cups, add crumble topping, and freeze. Bake from frozen, adding a few extra minutes to the baking time.
Plate of baked sourdough blueberry lemon muffins. In the foreground is one muffin with a bite taken out of it.

How to Serve Sourdough Blueberry Lemon Muffins

These bakery-style sourdough blueberry lemon muffins are pretty irresistible on their own, but here are a few easy ways to dress them up or round them out:

  • Warm them up and slather with butter for an indulgent breakfast moment. Add a drizzle of honey or maple syrup if you’re feeling fancy.
  • Pair with lemon curd or clotted cream for a tea-party-worthy treat. Use store-bought, or try my recipe for foolproof lemon curd!
  • Serve with a cup of coffee or earl grey tea for cozy weekend vibes.
  • Add a scoop of vanilla ice cream and call it dessert—no one’s judging.
  • Pack them for lunchboxes or road trips—they hold up well and stay soft for days!
Tray of baked sourdough blueberry lemon muffins.

FAQs

Can I use active sourdough starter instead of discard?

Yes! Both work well. Active starter may slightly alter the texture due to its stronger gluten structure.

Why did my muffins turn out dense or gummy?

Possible reasons include overmixing, expired baking powder, or underbaking. Ensure fresh leavening agents, mix until just combined, and verify oven temperature with a thermometer.

Can I double this recipe?

Absolutely. For best results, bake one tray at a time. If using a convection oven, you can bake both trays simultaneously—just rotate them halfway through. You could also freeze the second tray of portioned muffin dough to bake from frozen later!

Can I make these muffins gluten-free?

Yes, just swap out the all-purpose flour for a gluten-free all-purpose flour replacement such as Cup4Cup.Yes, substitute the all-purpose flour with a gluten-free all-purpose flour blend like Cup4Cup.Yes, just swap out the all-purpose flour for a gluten-free all-purpose flour replacement such as Cup4Cup.

Muffin pan with blueberry lemon muffins. One muffin with a bite taken out of it and an open muffin wrapper is in the foreground.

Tried These Muffins?

Don’t keep it to yourself! Leave a comment and a star rating below—it’s like sharing a virtual muffin with me, and it helps fellow bakers find this recipe.

Tray of baked sourdough blueberry lemon muffins, with loose blueberries and a sliced lemon scattered in the background.

Bakery-Style Sourdough Blueberry Lemon Muffins

Make these sourdough blueberry lemon muffins that put bakery muffins to shame! They're sweet and tangy at the same time, absolutely bursting with fresh or frozen blueberries, and topped with a lightly-spiced crumble that adds a delicious crunch to every bite. Thanks to the sourdough discard, they stay soft for days!
Print Recipe Pin Recipe
Prep Time 10 minutes mins
Cook Time 35 minutes mins
Servings: 12 muffins
Course: Breakfast, Brunch, Snack
Cuisine: American
Ingredients Method

Ingredients
  

Nutmeg Crumble Topping
  • 38 g all-purpose flour
  • 55 g granulated sugar
  • ⅛ teaspoon freshly-ground nutmeg or ground cinnamon
  • 28 g unsalted butter melted
Blueberry Muffin Batter
  • 250 g all-purpose flour
  • ¾ teaspoon fine sea salt
  • 1¾ teaspoon baking powder
  • ¼ teaspoon baking soda
  • 160 g granulated sugar
  • zest of 1 lemon
  • 80 g sourdough discard or active starter
  • 105 g whole milk
  • 55 g unsalted butter melted
  • 60 g neutral-flavoured oil such as grapeseed or canola
  • 50 g sour cream full-fat and at room temperature
  • 2 large eggs at room temperature
  • 1 tablespoon lemon juice about ½ lemon, fresh squeezed
  • 1 teaspoon vanilla extract
  • 175 grams blueberries fresh or frozen

Method
 

Spiced Crumble Topping
  1. To a medium bowl, add 38 g all-purpose flour, 55 g granulated sugar, and ⅛ teaspoon freshly-ground nutmeg. Whisk to combine, then pour over 28 g unsalted buttermelted. Stir together until combined and large crumbs form. Cover with plastic wrap (or place in an airtight container) and place in the fridge or freezer while you make the batter. You want the the butter to firm up before you use the crumble, so it stays in nice chunky pieces while the muffins bake!
Muffins
  1. Preheat the oven to 425˚F (220˚C). Line a standard muffin pan with paper liners. To a large mixing bowl, add 250 g all-purpose flour, ¾ teaspoon fine sea salt, 1¾ teaspoon baking powder, and ¼ teaspoon baking soda. Whisk together to combine.
  2. To a medium mixing bowl or measuring cup, add 160 g granulated sugar and zest of 1 lemon. Using your fingertips, rub the lemon zest into the sugar until the sugar resembles damp sand and smells intensely lemony.
  3. Add 80 g sourdough discard, 105 g whole milk, 55 g unsalted butter (melted), 60 g neutral-flavoured oil, 50 g sour cream, 2 large eggs, 1 tablespoon lemon juice, and 1 teaspoon vanilla extract to the lemon-infused sugar. Whisk to combine.
  4. Add the wet ingredients to the dry ingredients, and stir until just combined. Add 175 grams blueberries and fold in gently until evenly distributed.
  5. Use a blue cookie scoop (2 ounces or ¼ cup) to portion the batter evenly into the lined cups of the muffin pan. Sprinkle on a generous portion of crumble on top of each muffin. Bake for 5 minutes, then lower the oven temperature to 350˚F (175˚C) and bake another 15-25 minutes or until a toothpick inserted into the center comes out clean. When testing with a toothpick, try to avoid hitting any blueberries which will leave residue on the toothpick and make it difficult to see if the muffins are done baking.
  6. Let the muffins cool in the baking pan for 5-10 minutes, then transfer to a wire rack to cool completely. Muffins can be stored uncovered at room temperature for up to 3 days, or frozen in an airtight container or bag (after they've completely cooled) for up to 3 months.

Breakfast, Brunch, Quick Breads, Sourdough Discard

Reader Interactions

Leave a Reply Cancel reply

Your email address will not be published. Required fields are marked *

Recipe Rating




Primary Sidebar

About Image

Hello!

I'm Joanna, a self-taught baker, introvert, and cookbook collector (in that order). Lowbrow Fancy is all about making baking approachable—whether you're tackling a fancy French pastry or a simple chocolate chip cookie. With clear, thoroughly-tested recipes, you'll feel confident in the kitchen, no matter your skill level!

More about me

Footer

Sign up for My Email List

Get some baking joy in your inbox! I love to share recipes, tips & tricks, and baking inspiration.

By submitting this form you agree to receive emails from me. You can unsubscribe any time if it's not your jam!

  • Contact
  • Disclosure Policy
  • Privacy Policy

Copyright © 2022-2025 Lowbrow Fancy, all rights reserved.