These sourdough blueberry lemon muffins are everything a bakery muffin wishes it could be: tall, tender, bursting with juicy berries, and topped with a buttery, spiced crumble that delivers serious coffee shop vibes—without the price tag.
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Jump To:
- You’re Going to Love These Muffins!
- Ingredients You’ll Need (And Why)
- How to Make Sourdough Blueberry Lemon Muffins
- Tips for Bakery-Style Sourdough Blueberry Lemon Muffins
- Flavour Variations
- Make-Ahead and Storage
- How to Serve Sourdough Blueberry Lemon Muffins
- FAQs
- Tried These Muffins?
- Bakery-Style Sourdough Blueberry Lemon Muffins
You’re Going to Love These Muffins!
- Bakery-style domed tops: Impressively tall and golden, no fancy equipment required!
- Bright, juicy flavour from fresh or frozen blueberries paired with lemon zest and juice for a classic flavour combo.
- Sourdough discard adds a subtle tang and keeps the muffins moist for days.
- Buttery crumble topping adds lots of crunch with a hint of nutmeg, for the perfect texture contrast.
- Super flexible: make these the same day, or ferment the dough in the fridge overnight for an even better flavour and texture.
- Better than bakery muffins! No dry, overly sweet disappointments here—just real ingredients and flavour that shines.
If you like the idea of blueberry lemon muffins, you’ll also love my blueberry lemon scones made with sourdough discard! Or if you love muffins, you should try making my Sourdough Double Chocolate Banana Muffins recipe.

Ingredients You’ll Need (And Why)
What makes these muffins really shine:
- Sourdough discard or active starter adds tangy flavour complexity and keeps the crumb tender and moist. You can leave the muffins uncovered at room temperature, and they’ll still be soft three days later! No starter yet? Learn how to make a sourdough starter from scratch (it’s easier than you think, I promise!). Alternatively, ask in a local Facebook group, check with a nearby bakery, or purchase dehydrated starter online.
- Lemon zest & juice: Zest rubbed into sugar releases essential oils for maximum flavor; juice adds brightness and reacts with baking soda for lift.
- Sour cream Contributes richness and a tender crumb.
- Blueberries: Fresh or frozen, they add juicy bursts of fruity flavour.
- Crumble topping with melted butter, flour, sugar, and a pinch of nutmeg creates a crunchy, spiced topping.
Pro Tip
If using frozen blueberries, mix them into the batter straight from the freezer and bake immediately to minimize bleeding.
How to Make Sourdough Blueberry Lemon Muffins
Step 1: Make the Crumble Topping
- Whisk together flour, sugar, and nutmeg.
- Add melted butter and stir until large crumbs form.
- Refrigerate or freeze while preparing the batter.
Step 2: Prep the Muffin Batter
- Rub lemon zest into sugar until fragrant.
- Whisk in sourdough discard, sour cream, lemon juice, eggs, and vanilla.
- In a separate bowl, whisk together flour, baking powder, baking soda, and salt.
- Combine wet and dry ingredients until just mixed.
- Gently fold in blueberries.
Pro Tip
Use a blue (2 oz) cookie scoop or ¼-cup measuring cup to make sure each muffin gets the same amount of batter.

Step 3: Assemble and Bake
- Divide batter evenly into muffin cups.
- Top each with a generous amount of crumble topping.
- Bake at 425°F (220°C) for 5 minutes, then reduce to 350°F (175°C) and continue baking until a toothpick comes out clean.
- Use a blue cookie scoop or ¼-cup measuring cup to portion the batter into muffin cups
- Top each with a generous sprinkling of crumble topping
- Bake at 425°F for 5 minutes, then reduce to 350°F until done
Pro Tip
Starting at a high heat gives the muffins a quick boost to create a beautiful bakery-style domed top.

Tips for Bakery-Style Sourdough Blueberry Lemon Muffins
- Rest the batter: Let it sit for 15–30 minutes before baking for taller muffins. Skip this tip if using frozen blueberries, which need to be baked immediately after being added to the batter.
- Don’t overmix: A few lumps are okay; overmixing can lead to dense muffins.
- Use an oven thermometer: Ensure accurate temperature for even baking.
- Rotate the pan: Turn halfway through baking to promote even rise and browning.
Pro Tip
Leave the batter in the fridge overnight. Some fermentation will take place, which will make the flavour and texture even better!

Flavour Variations
- Berry swap: Use raspberries or blackberries instead of blueberries.
- Add poppy seeds: Stir in a tablespoon for a lemon-poppy-blueberry twist.
- Cranberry Orange: Replace blueberries and lemon with fresh cranberries and orange zest and juice for a wintery version.

Make-Ahead and Storage
- Room temperature: Store uncovered or in an airtight container for up to 3 days.
- Freeze baked muffins: Cool completely, then freeze in an airtight container for up to 3 months.
- Freeze unbaked batter: Portion into muffin cups, add crumble topping, and freeze. Bake from frozen, adding a few extra minutes to the baking time.

How to Serve Sourdough Blueberry Lemon Muffins
These bakery-style sourdough blueberry lemon muffins are pretty irresistible on their own, but here are a few easy ways to dress them up or round them out:
- Warm them up and slather with butter for an indulgent breakfast moment. Add a drizzle of honey or maple syrup if you’re feeling fancy.
- Pair with lemon curd or clotted cream for a tea-party-worthy treat. Use store-bought, or try my recipe for foolproof lemon curd!
- Serve with a cup of coffee or earl grey tea for cozy weekend vibes.
- Add a scoop of vanilla ice cream and call it dessert—no one’s judging.
- Pack them for lunchboxes or road trips—they hold up well and stay soft for days!

FAQs
Yes! Both work well. Active starter may slightly alter the texture due to its stronger gluten structure.
Possible reasons include overmixing, expired baking powder, or underbaking. Ensure fresh leavening agents, mix until just combined, and verify oven temperature with a thermometer.
Absolutely. For best results, bake one tray at a time. If using a convection oven, you can bake both trays simultaneously—just rotate them halfway through. You could also freeze the second tray of portioned muffin dough to bake from frozen later!
Yes, just swap out the all-purpose flour for a gluten-free all-purpose flour replacement such as Cup4Cup.Yes, substitute the all-purpose flour with a gluten-free all-purpose flour blend like Cup4Cup.Yes, just swap out the all-purpose flour for a gluten-free all-purpose flour replacement such as Cup4Cup.

Tried These Muffins?
Don’t keep it to yourself! Leave a comment and a star rating below—it’s like sharing a virtual muffin with me, and it helps fellow bakers find this recipe.

Bakery-Style Sourdough Blueberry Lemon Muffins
Ingredients
Method
- To a medium bowl, add 38 g all-purpose flour, 55 g granulated sugar, and ⅛ teaspoon freshly-ground nutmeg. Whisk to combine, then pour over 28 g unsalted buttermelted. Stir together until combined and large crumbs form. Cover with plastic wrap (or place in an airtight container) and place in the fridge or freezer while you make the batter. You want the the butter to firm up before you use the crumble, so it stays in nice chunky pieces while the muffins bake!
- Preheat the oven to 425˚F (220˚C). Line a standard muffin pan with paper liners. To a large mixing bowl, add 250 g all-purpose flour, ¾ teaspoon fine sea salt, 1¾ teaspoon baking powder, and ¼ teaspoon baking soda. Whisk together to combine.
- To a medium mixing bowl or measuring cup, add 160 g granulated sugar and zest of 1 lemon. Using your fingertips, rub the lemon zest into the sugar until the sugar resembles damp sand and smells intensely lemony.
- Add 80 g sourdough discard, 105 g whole milk, 55 g unsalted butter (melted), 60 g neutral-flavoured oil, 50 g sour cream, 2 large eggs, 1 tablespoon lemon juice, and 1 teaspoon vanilla extract to the lemon-infused sugar. Whisk to combine.
- Add the wet ingredients to the dry ingredients, and stir until just combined. Add 175 grams blueberries and fold in gently until evenly distributed.
- Use a blue cookie scoop (2 ounces or ¼ cup) to portion the batter evenly into the lined cups of the muffin pan. Sprinkle on a generous portion of crumble on top of each muffin. Bake for 5 minutes, then lower the oven temperature to 350˚F (175˚C) and bake another 15-25 minutes or until a toothpick inserted into the center comes out clean. When testing with a toothpick, try to avoid hitting any blueberries which will leave residue on the toothpick and make it difficult to see if the muffins are done baking.
- Let the muffins cool in the baking pan for 5-10 minutes, then transfer to a wire rack to cool completely. Muffins can be stored uncovered at room temperature for up to 3 days, or frozen in an airtight container or bag (after they've completely cooled) for up to 3 months.

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